1:BUILD_BY[name] student1
1:BUILD_ENVIRONMENT[operating system 32 vs 64] Ubuntu12.04 64
1:DEPENDENCIES[list of dependencies with where to get them]

1:END_DEPENDENCIES
1:NOTES[notes on attempted build]

Code compiles and runs. Tried the protein version. Don't have the right dataset, but tried with a subset from the dataset file (the dataset file was gigantic so did not download it ~6gb)

There are other code files to test the other data sets as well.  

student1@ubuntu:~/Downloads/builds/vldb12_new/ZhuKA$ javac FileReadWrite.java 
student1@ubuntu:~/Downloads/builds/vldb12_new/ZhuKA$ java FileReadWrite 
Total number of sequences is: 0
student1@ubuntu:~/Downloads/builds/vldb12_new/ZhuKA$ javac Segmentation.java 
student1@ubuntu:~/Downloads/builds/vldb12_new/ZhuKA$ java Segmentation 
Total number of sequences is: 0
Total number of subsequences is: 0
student1@ubuntu:~/Downloads/builds/vldb12_new/ZhuKA$ 

1:END_NOTES
VERIFY:ANALYSIS_BY[name]
VERIFY:STATUS[unknown,needed,not_needed,started,finished] unknown
VERIFY:COMMENT[string]